Information for

Logo VIS

Molecular Dynamics Visualization

Introduction

Particle based visualization from a molecular dynamics simulation consisting of 1.28 million CO2 molecules.

Large datasets of particle data still pose a big challenge for visual analyzing methods. Explorative analysis is important when unexpected effects inside the data occur. For this kind of analysis, interactive visualization provides an optimal method. Subproject D.3 of SFB 716 faces the challenge of visualizing large, time-dependent particle datasets and develops new methods and algorithms to reach this goal. Major enhancements to particle visualization are needed as well as close cooperation with domain experts inside the SFB to accomplish this task.

Particle-based visualization has been developed further massively in SFB subprojects. The point-based visualization approach as well as GPU-raycasting of implicit surfaces makes is possible to interactively visualize datasets containing millions of particles at high quality. The large size, and the time-dependency of these datasets, the data transfer between secondary storage, main memory and graphics memory becomes a severe bottleneck and transfer methods have been studied and optimized. A two-phase culling approach has been developed and optimized for particle-based data which allows for interactive representation of 107 to 109 particles on a standard workstation.

To improve representation quality besides rendering speed as well the “deferred shading” based visualization has been extended. The aspect of optimal rendering methods for complex glyph, like dipole glyphs, composite glyphs for molecules without inner degrees of freedom, and polyhedron-based glyphs for porous media, representations has been investigated as well. To enhance perception and understanding of the presented data, filtering is needed, like visualization of crystal defects in metals. Structures inside datasets are of special interest if we want to observe temporal development of this data. To compensate for overlap and visual overload when using path lines the dataset has been filtered using new, density conserving clustering techniques. Based on this work other static representations of dynamic phenomena will be developed for other subprojects inside SFB, allowing more effective analysis.

MegaMol™

To this end, an extensible and adoptable visualization framework has been developed during the first funding period of the SFB 716: MegaMol™. Highly optimized renderers and data structures form the basis for the current visualization research for this subproject, as well as for the visualization subprojects D.4 and D.5 of the SFB. The modular architecture of the software, adaptable at run time, and the extensibility through a plug-in interface and simple programming interfaces MegaMol™ is optimally suited for the wide range of different demands of the subprojects of the SFB 716.

MegaMol™ succeeds MolCloud, which has been developed at the University of Stuttgart in order to visualize point-based datasets. MegaMol™ is written in C++, and uses an OpenGL as Rendering-API and GLSL-Shader. It supports the operating systems Microsoft Windows (Vista, 7) and Linux (Suse), each in 32-bit and 64-bit versions. In large parts, MegaMol™ is based on VISlib (website currently only available in german), a C++-class library for scientific visualization, which has also been developed at the University of Stuttgart.

Projects

  • Collaborative Research Center (SFB) 716 - Dynamic simulation of systems with large particle numbers
    Project D.3 - Visualization of Systems with Large Numbers of Particles
    Long-term goal of the project D.3 is the development of methods for interactive, visual analysis and exploration of simulation data sets with large numbers of particles and long trajectories.
  • MegaMol™
    MegaMol™ is a visualization middleware used to visualize point-based molecular datasets.
  • DLR Landesstiftungsprojekt 688: Visualisierung der Keimbildung in Mischungen für skalenübergreifende Modelle (completed)
    This Project formed the foundations for the Projects D.3 and D.4 established in the SFB 716 by providing essential work in the field of interactive visualization of molecular dynamics simulation data. The funding of this project by the Landesstiftung Baden-Württemberg ended at the end of 2006.
  • MolCloud (completed)
    MolCloud
    is a visualization utility for molecular dynamic data sets, developet at the university of stuttgart. In fall 2006 the project was ended and the work on MegaMol™ has begun as follow-up project.
  • PointCloud (completed)
    PointCloud accelerates rendering of scattered point data by a hierarchical data structure based on a PCA clustering procedure and thus formed the starting project of point-based visualization at our institute.

Publications

2017

Molecular Surface Maps
Krone, Michael; Frieß, Florian; Scharnowski, Katrin; Reina, Guido; Fademrecht, Silvia; Kulschewski, Tobias; Pleiss, Jürgen; Ertl, Thomas: Molecular Surface Maps. In: IEEE Transactions on Visualization and Computer Graphics (Proceedings of the Scientific Visualization 2016): Vol. 23, No. 1 (2017) (to appear).
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2016

A Taxonomy and Survey of Dynamic Graph Visualization
Beck, Fabian; Burch, Michael; Diehl, Stephan; Weiskopf, Daniel: A Taxonomy and Survey of Dynamic Graph Visualization. In: Computer Graphics Forum (2016) (to appear).
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The Challenges of Designing Metro Maps
Burch, Michael; Woods, Robin; Netzel, Rudolf; Weiskopf, Daniel: The Challenges of Designing Metro Maps. In: Proceedings of the 11th Joint Conference on Computer Vision, Imaging and Computer Graphics Theory and Applications (2016), pp. 195-202.
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Reading-based Screenshot Summaries for Supporting Awareness of Desktop Activities
Dingler, Tilman; El Agroudy, Passant; Matheis, Gerd; Schmidt, Albrecht: Reading-based Screenshot Summaries for Supporting Awareness of Desktop Activities. In: Proceedings of the 7th Augmented Human International Conference 2016 (2016).
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Heimerl, Florian; Han, Qi; Koch, Steffen; Ertl, Thomas: CiteRivers: Visual Analytics of Citation Patterns. In: Transactions on Visualization and Computer Graphics (2016).
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Gaze Stripes: Image-Based Visualization of Eye Tracking Data
Kurzhals, Kuno; Hlawatsch, Marcel; Heimerl, Florian; Burch, Michael; Ertl, Thomas; Weiskopf, Daniel: Gaze Stripes: Image-Based Visualization of Eye Tracking Data. In: IEEE Transactions on Visualization and Computer Graphics: Vol. 22, No. 1 (2016), pp. 1005--1014.
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Space-Time Bifurcation Lines for Extraction of 2D Lagrangian Coherent Structures
Machado, Gustavo; Boblest, Sebastian; Ertl, Thomas; Sadlo, Filip: Space-Time Bifurcation Lines for Extraction of 2D Lagrangian Coherent Structures. In: Computer Graphics Forum: Vol. 35, No. 3 (2016), pp. 91-100.
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Müller, Thomas; Fechtig, Oliver: Empirical exploration of timelike geodesics around a rotating wormhole. In: : Vol. 84, No. 5 (2016) (to appear).
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Interactive Scanpath-Oriented Annotation of Fixations
Netzel, Rudolf; Burch, Michael; Weiskopf, Daniel: Interactive Scanpath-Oriented Annotation of Fixations. In: Proceedings of the Ninth Biennial ACM Symposium on Eye Tracking Research & Applications (2016), pp. 183-187.
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Netzel, Rudolf; Burch, Michael; Weiskopf, Daniel: User Performance and Reading Strategies for Metro Maps: An Eye Tracking Study. In: Special Issue on Eye Tracking for Spatial Research in Spatial Cognition and Computation: An Interdisciplinary Journal (2016) (to appear).
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Sifting through Visual Arts Collections
Pflüger, Hermann; Ertl, Thomas: Sifting through Visual Arts Collections. In: Computers & Graphics: Vol. 2016, No. 57 (2016), pp. 127-138.
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Burch, Michael: The Dynamic Graph Wall: Visualizing Evolving Graphs with Multiple Visual Metaphors. In: Journal of Visualization (2016).
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Burch, Michael: Visual Analytics of Large Dynamic Digraphs. In: Journal of Information Visualization (2016).
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Dingler, Tilman; Schmidt, Albrecht: Peripheral Displays to Support Human Cognition. In: Springer International Publishing: Peripheral Interaction. 2016.
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Burch, Michael; Weiskopf, Daniel: Lyrics Word Clouds. In: International Conference on Information Visualisation (to appear).
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Burch, Michael; Netzel, Rudolf; Weiskopf, Daniel: How Map Design Can Benefit From Eye Tracking. In: BCS/SoC Mapping Conference (to appear).
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: Intimate Proxemic Zones of Exhibits and their Manipulation using Floor Projection. In: (to appear).
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Burch, Michael: Isoline-Enhanced Dynamic Graph Visualization. In: International Conference on Information Visualisation (to appear).
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Super Alpha: Arabic Alphabet Learning Serious Game for Children with Learning Disabilities
Jailan , Salah; Slim, Abdennadher; Caroline , Sabty; Abdelrahman, Yomna: Super Alpha: Arabic Alphabet Learning Serious Game for Children with Learning Disabilities. In: JCSG 2016 the 7th Serious Games Development & Applications (to appear).
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John, Markus; Lohmann, Steffen; Koch, Steffen; Wörner, Michael; Ertl, Thomas: Visual Analytics for Narrative Text. In: Proceedings of the 7th International Conference on Information Visualization Theory and Applications (IVAPP 2016) (to appear).
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Fixation-Image Charts
Kurzhals, Kuno; Hlawatsch, Marcel; Burch, Michael; Weiskopf, Daniel: Fixation-Image Charts. In: Proceedings of the Symposium on Eye Tracking Research & Applications, pp. 11--18, 2016.
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Impact of Video Summary Viewing on Episodic Memory Recall – Design Guidelines for Video Summarizations
Le, Huy Viet; Clinch, Sarah; Sas, Corina; Dingler, Tilman; Henze, Niels; Davies, Nigel: Impact of Video Summary Viewing on Episodic Memory Recall – Design Guidelines for Video Summarizations. In: Proceedings of the 2016 CHI Conference on Human Factors in Computing Systems (CHI '16), 2016.
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Schulz, Christoph; Nocaj, Arlind; El-Assady, Mennatallah; Frey, Steffen; Hlawatsch, Marcel; Hund, Michael; Karch, Grzegorz K.; Netzel, Rudolf; Schätzle, Christin; Butt, Miriam; Keim, Daniel; Ertl, Thomas; Brandes, Ulrik; Weiskopf, Daniel: Generative Data Models for Validation and Evaluation of Visualization Techniques. In: BELIV 2016 (to appear).
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Schulz, Christoph; Nocaj, Arlind; Goertler, Jochen; Deussen, Oliver; Brandes, Ulrik; Weiskopf, Daniel: Probabilistic Graph Layout for Uncertain Network Visualization. In: IEEE Symposium on Information Visualization (InfoVis) (to appear).
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Burch, Michael: Time-Preserving Visual Attention Maps. In: International Conference on Intelligent Decision Technologies, 2016.
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Burch, Michael: Visual Analysis of Compound Graphs. In: Conference on Visual Languages and Human-Centric Computing (VLHCC) (to appear).
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Intimate Proxemic Zones of Exhibits and their Manipulation using Floor Projection
Wolf, Katrin; Abdelrahman, Yomna; Kubitza, Thomas; Schmidt, Albrecht: Intimate Proxemic Zones of Exhibits and their Manipulation using Floor Projection. In: The Fifth ACM International Symposium on Pervasive Displays, 2016.
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Finger Placement and Hand Grasp during Smartphone Interaction
Le, Huy Viet; Mayer, Sven; Wolf, Katrin; Henze, Niels: Finger Placement and Hand Grasp during Smartphone Interaction. In: Proceedings of the 2016 CHI Conference Extended Abstracts on Human Factors in Computing Systems (CHI EA '16), 2016.
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Neue Methoden und Techniken für die Evaluation von Visualisierungen
Raschke, Michael: Neue Methoden und Techniken für die Evaluation von Visualisierungen. Diss., Universität Stuttgart, 2016.
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2015

Burch, Michael; Weiskopf, Daniel: Flip-Book Visualization of Dynamic Graphs. In: International Journal of Software and Informatics (IJSI) (2015).
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A Real-Time Bidding Platform for Public Displays
Dingler, Tilman; Schmidt, Albrecht: A Real-Time Bidding Platform for Public Displays. In: Proceedings of the 4th International Symposium on Pervasive Displays (2015).
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Workshop on Mobile Cognition: Using Mobile Devices to Enhance Human Cognition
Dingler, Tilman; Bexheti, Agon; Niforatos, Evangelos; Alt, Florian: Workshop on Mobile Cognition: Using Mobile Devices to Enhance Human Cognition. In: Proceedings of the 17th International Conference on Human-Computer Interaction with Mobile Devices and Services Adjunct (2015).
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Interaction Proxemics: Combining Physical Spaces for Seamless Gesture Interaction
Dingler, Tilman; Funk, Markus; Alt, Florian: Interaction Proxemics: Combining Physical Spaces for Seamless Gesture Interaction. In: (2015).
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uCanvas: A Web Framework for Spontaneous Smartphone Interaction with Ubiquitous Displays
Dingler, Tilman; Grau, Yves; Bagg, Tobias; Henze, Niels; Schmidt, Albrecht: uCanvas: A Web Framework for Spontaneous Smartphone Interaction with Ubiquitous Displays. In: Human-Computer Interaction--INTERACT 2015 (2015).
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I'll Be There for You: Quantifying Attentiveness Towards Mobile Messaging
Dingler, Tilman; Pielot, Martin: I'll Be There for You: Quantifying Attentiveness Towards Mobile Messaging. In: Proceedings of the 17th International Conference on Human-Computer Interaction with Mobile Devices and Services (2015).
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Ertl, Thomas; Sadlo, Filip; Frey, Steffen: Balanced Sampling and Compression for Remote Visualization. In: (2015).
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Stop Helping Me - I'M Bored!: Why Assembly Assistance Needs to Be Adaptive
Funk, Markus; Dingler, Tilman; Cooper, Jennifer; Schmidt, Albrecht: Stop Helping Me - I'M Bored!: Why Assembly Assistance Needs to Be Adaptive. In: Adjunct Proceedings of the 2015 ACM International Joint Conference on Pervasive and Ubiquitous Computing and Proceedings of the 2015 ACM International Symposium on Wearable Computers (2015).
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Haag, Florian; Lohmann, Steffen; Negru, Stefan; Ertl, Thomas: OntoViBe 2: Advancing the Ontology Visualization Benchmark. In: Proceedings of EKAW 2014 Satellite Events (2015), pp. 83--98.
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Haag, Florian; Lohmann, Steffen; Siek, Stephan; Ertl, Thomas: Visual Querying of Linked Data with QueryVOWL. In: Proceedings of the 3rd International Workshop on Human-Semantic Web Interaction (HSWI '15) (2015) (to appear).
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John, Markus; Koch, Steffen; Heimerl, Florian; Müller, Andreas; Ertl, Thomas; Kuhn, Jonas: Interactive Visual Analysis Of German Poetics. In: Proceedings of the Digital Humanities 2015 (2015).
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2Nd Workshop on Ubiquitous Technologies to Augment the Human Mind: Towards the Knowledge Log
Kunze, Kai; Dingler, Tilman; Henze, Niels; Kise, Koichi; Sato, Yoichi: 2Nd Workshop on Ubiquitous Technologies to Augment the Human Mind: Towards the Knowledge Log. In: Proceedings of the 2015 ACM International Joint Conference on Pervasive and Ubiquitous Computing and Proceedings of the 2015 ACM International Symposium on Wearable Computers (2015).
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The Augmented Narrative: Toward Estimating Reader Engagement
Kunze, Kai; Sanchez, Susana; Dingler, Tilman; Augereau, Olivier ; Kise, Koichi; Inami, Masahiko ; Tsutomu, Terada: The Augmented Narrative: Toward Estimating Reader Engagement. In: Proceedings of the 6th Augmented Human International Conference (2015).
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Kurzhals, Kuno; Burch, Michael; Pfeiffer, Thies; Weiskopf, Daniel: Eye Tracking in Computer-Based Visualization. In: Computing in Science & Engineering: Vol. 17, No. 5 (2015), pp. 64--71.
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Kurzhals, Kuno; Weiskopf, Daniel: Eye Tracking for Personal Visual Analytics. In: IEEE Computer Graphics and Applications: Vol. 99, No. 1 (2015), pp. 64--71.
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Kurzhals, Kuno; Fisher, Brian; Burch, Michael; Weiskopf, Daniel: Eye Tracking Evaluation of Visual Analytics. In: Information Visualization (2015) (to appear).
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Simulating Fixations when Looking at Visual Arts
Pflüger, Hermann; Höferlin, Benjamin; Raschke, Michael; Ertl, Thomas: Simulating Fixations when Looking at Visual Arts. In: ACM Transactions on Applied Perception : Vol. 12, No. 3 (2015).
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When Attention is Not Scarce - Detecting Boredom from Mobile Phone Usage
Pielot, Martin; Dingler, Tilman; San Pedro, Jose; Oliver, Nuria: When Attention is Not Scarce - Detecting Boredom from Mobile Phone Usage. In: Proceedings of the 2015 ACM International Joint Conference on Pervasive and Ubiquitous Computing (2015).
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Effects of Camera Position and Media Type on Lifelogging Images
Wolf, Katrin; Abdelrahman, Yomna; Schmid, David; Dingler, Tilman; Schmidt, Albrecht: Effects of Camera Position and Media Type on Lifelogging Images. In: Proceedings of the 14th International Conference on Mobile and Ubiquitous Multimedia (2015).
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Spezielle und allgemeine Relativitätstheorie - Grundlagen, Anwendungen in Astrophysik und Kosmologie sowie relativistische Visualisierung
Boblest, Sebastian; Müller, Thomas; Wunner, Günter: Spezielle und allgemeine Relativitätstheorie - Grundlagen, Anwendungen in Astrophysik und Kosmologie sowie relativistische Visualisierung. Berlin Heidelberg: Springer Spektrum, 2015.
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Visual Analytics of User Influence and Location-Based Social Networks
Zhang, Jiawei; Chae, Junghoon; Afzal, Shehzad; Malik, Abish; Thom, Dennis; Jang, Yun; Ertl, Thomas; Matei, Sorin A.; Ebert, David S.: Visual Analytics of User Influence and Location-Based Social Networks. In: Sorin Matei, Martha Russell, Elisa Bertino: Transparancy in Social Media. Heidelberg: Springer, 2015.
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Implicit Engagement Detection for Interactive Museums Using Brain-Computer Interfaces
Abdelrahman, Yomna; Hassib, Mariam A.; Funk, Markus; Schmidt, Albrecht: Implicit Engagement Detection for Interactive Museums Using Brain-Computer Interfaces. In: MobileHCI '15 Proceedings of the 17th International Conference on Human-Computer Interaction with Mobile Devices and Services Adjunct, 2015.
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Tick that Box: Interactive Paper Documents
Abdelrahman, Yomna; Kubitza, Thomas; Pohl, Norman; Wolf, Katrin; Schmidt, Albrecht: Tick that Box: Interactive Paper Documents. In: 15th IFIP TC 13 International Conference, Bamberg, Germany, September 14-18, 2015, Proceedings, Part III, 2015.
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Investigation of Material Properties for Thermal Imaging-Based Interaction
Abdelrahman, Yomna; Sahami, Alireza; Henze, Niels; Schmidt, Albrecht: Investigation of Material Properties for Thermal Imaging-Based Interaction. In: CHI '15 Proceedings of the 33rd Annual ACM Conference on Human Factors in Computing Systems, 2015.
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Boblest, Sebastian; Hempert, Fabian; Hoffmann, Malte; Offenhäuser, Philipp; Sonntag, Matthias; Sadlo, Filip; Glass, Colin W.; Munz, Claus-Dieter; Ertl, Thomas; Iben, Uwe: Toward a Discontinuous Galerkin Fluid Dynamics Framework for Industrial Applications. In: High Performance Computing in Science and Engineering' 15, pp. 531-545, 2015.
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Broy, Nora; Guo, Mengbing; Schneegaß, Stefan; Pfleging, Bastian; Alt, Florian: Introducing Novel Technologies in the Car – Conducting a Real-World Study to Test 3D Dashboards. In: Proceedings of the 7th International Conference on Automotive User Interfaces and Interactive Vehicular Applications (to appear).
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: Effects of Camera Position and Media Type on Lifelogging Images. In: , 2015.
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Using In-Situ Projection to Support Cognitively Impaired Workers at the Workplace
Funk, Markus; Mayer, Sven; Schmidt, Albrecht: Using In-Situ Projection to Support Cognitively Impaired Workers at the Workplace. In: Proceedings of the 17th international ACM SIGACCESS conference on Computers & accessibility, 2015.
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Pick from here!: an interactive mobile cart using in-situ projection for order picking
Funk, Markus; Sahami, Alireza; Mayer, Sven; Lischke, Lars; Schmidt, Albrecht: Pick from here!: an interactive mobile cart using in-situ projection for order picking. In: Proceedings of the 2015 ACM International Joint Conference on Pervasive and Ubiquitous Computing, pp. 601-609, 2015.
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Guo, Junfei; Liu, Juan; Chen, Xianlong; Han, Qi; Zhou, Kunxiao: Tunable Discounting Mechanisms for Language Modeling. In: IScIDE, pp. 585-594, 2015.
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Domain mining for machine translation
Guo, Junfei; Liu, Juan; Han, Qi; Chen, Xianlong; Zhao, Yi: Domain mining for machine translation. In: Journal of Intelligent & Fuzzy Systems, pp. 2769-2777, 2015.
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Visualization of 2D Wave Propagation by Huygens' Principle
Heßel, Stefan; Fernandes, Oliver; Boblest, Sebastian; Offenhäuser, Philipp; Hoffmann, Malte; Beck, Andrea; Ertl, Thomas; Glass, Colin; Munz, Claus-Dieter; Sadlo, Filip: Visualization of 2D Wave Propagation by Huygens' Principle. In: Proceedings of Eurographics Symposium on Parallel Graphics and Visualization (EGPGV), pp. 19-28, 2015.
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IS-EUD 2015 Studio: Exploring End User Programming of Interactive Spaces
Kubitza, Thomas; Schmidt, Albrecht: IS-EUD 2015 Studio: Exploring End User Programming of Interactive Spaces. In: End-User Development - 5th International Symposium (IS-EUD 2015), pp. 283-286, 2015.
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Towards a Toolkit for the Rapid Creation of Smart Environments
Kubitza, Thomas; Schmidt, Albrecht: Towards a Toolkit for the Rapid Creation of Smart Environments. In: End-User Development - 5th International Symposium (IS-EUD 2015), pp. 230-235, 2015.
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Kurzhals, Kuno; Weiskopf, Daniel: AOI Transition Trees. In: Proceedings of the 41st Graphics Interface Conference , pp. 41--48, 2015.
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Lohmann, Steffen; Heimerl, Florian; Bopp, Fabian; Burch, Michael; Ertl, Thomas: ConcentriCloud: Word Cloud Visualization for Multiple Text Documents. In: 19th International Conference on Information Visualisation (to appear).
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Müller, A.; John, Markus; Koch, Steffen; Ertl, Thomas; Kuhn, Jonas: Erkennung und Visualisierung attribuierter Phrasen in Poetiken. In: Proceedings of the Digital Humanities im deutschprachigen Raum 2015, 2015.
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In-Situ Visualisation of Fractional Code Ownership over Time
Müller, Christoph; Reina, Guido; Ertl, Thomas: In-Situ Visualisation of Fractional Code Ownership over Time. In: International Symposium on Visual Information Communication and Interaction (VINCI) (to appear).
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Visualization Showcase: General-Relativistic Black Hole Visualization
Müller, Thomas; Boblest, Sebastian; Weiskopf, Daniel: Visualization Showcase: General-Relativistic Black Hole Visualization. In: Eurographics Symposium on Parallel Graphics and Visualization, 2015.
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Remote Visualization of Dynamic Molecular Data using WebGL
Mwalongo, Finian; Krone, Michael; Becher, Michael; Reina, Guido; Ertl, Thomas: Remote Visualization of Dynamic Molecular Data using WebGL. In: International Conference on 3D Web Technology (Web3D), pp. 115-122, 2015.
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Exploratory Performance Analysis and Tuning of Parallel Interactive Volume Visualization on Large Displays
Panagiotidis, Alexandros; Frey, Steffen; Ertl, Thomas: Exploratory Performance Analysis and Tuning of Parallel Interactive Volume Visualization on Large Displays. In: Eurographics Conference on Visualization - Short Papers, pp. 13-17, 2015.
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Consistently GPU-Accelerated Graph Visualization
Panagiotidis, Alexandros; Reina, Guido; Burch, Michael; Pfannkuch, Tilo; Ertl, Thomas: Consistently GPU-Accelerated Graph Visualization. In: International Symposium on Visual Information Communication and Interaction (to appear).
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Analysis of Visual Arts Collections
Pflüger, Hermann; Ertl, Thomas: Analysis of Visual Arts Collections. In: Proceedings of SIGRAD 2015,, pp. 1-4, 2015.
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From Mobile to Wearable: Using Wearable Devices to Enrich Mobile Interaction
Schneegaß, Stefan; Mayer, Sven; Olsson, Thomas; Van Laerhoven, Kristof : From Mobile to Wearable: Using Wearable Devices to Enrich Mobile Interaction. In: Proceedings of the 17th International Conference on Human-Computer Interaction with Mobile Devices and Services Adjunct, pp. 936-939, 2015.
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Burch, Michael: Visualizing Software Metrics in a Software System Hierarchy. In: International Symposium on Visual Computing (ISVC), 2015.
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Towards Smart Notifications using Research in the Large
Weber, Dominik; Sahami, Alireza; Henze, Niels: Towards Smart Notifications using Research in the Large. In: Proceedings of the 17th International Conference on Human-Computer Interaction with Mobile Devices and Services Adjunct, pp. 1117--1122, 2015.
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meSch – tools for interactive exhibitions
Wolf, Katrin; Abdelrahman, Yomna; Kubitza, Thomas; Schmidt, Albrecht: meSch – tools for interactive exhibitions. In: EVA '15 Proceedings of the Conference on Electronic Visualisation and the Arts, 2015.
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TUIs in the Large: Using Paper Tangibles with Mobile Devices
Wolf, Katrin; Schneegaß, Stefan; Henze, Niels; Weber, Dominik; Schwind, Valentin; Knierim, Pascal; Mayer, Sven; Dingler, Tilman; Abdelrahman, Yomna; Kubitza, Thomas; Funk, Markus; Mebus, Anja; Schmidt, Albrecht: TUIs in the Large: Using Paper Tangibles with Mobile Devices. In: Proceedings of the 33rd Annual ACM Conference Extended Abstracts on Human Factors in Computing Systems, 2015.
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Haag, Florian; Lohmann, Steffen; Siek, Stephan; Ertl, Thomas: QueryVOWL: Visual Composition of SPARQL Queries. In: Proceedings of ESWC 2015 Satellite Events, 2015.
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Vehlow, Corinna: Visualization Techniques for Group Structures in Graphs. Diss., Fakultät Informatik, Elektrotechnik und Informationstechnik, Universität Stuttgart, 2015.
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2014

Visual Analysis for Space-Time Aggregation of Biomolecular Simulations
Ertl, Thomas; Krone, Michael; Kesselheim, Stefan; Scharnowski, Katrin; Reina, Guido; Holm, Christian: Visual Analysis for Space-Time Aggregation of Biomolecular Simulations. In: Faraday Discussions (2014).
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Comparative Visualization of Molecular Surfaces Using Deformable Models
Scharnowski, Katrin; Krone, Michael; Reina, Guido; Kulschewski, Tobias; Pleiss, Jürgen; Ertl, Thomas: Comparative Visualization of Molecular Surfaces Using Deformable Models. In: Computer Graphics Forum: Vol. 33, No. 3 (2014), pp. 191-200.
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Analytical Aesthetics Applied to Large Collections of Works of Visual Arts
Pflüger, Hermann: Analytical Aesthetics Applied to Large Collections of Works of Visual Arts. epubli GmbH, 2014.
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Eye Tracker Data and Simulated Fixations
Pflüger, Hermann: Eye Tracker Data and Simulated Fixations. Berlin: epubli, 2014.
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Davies, Nigel; Langheinrich, Marc; Clinch, Sarah; Elhart, Ivan; Friday, Adrian; Kubitza, Thomas; Surajbali, Bholanathsingh: Personalisation and privacy in future pervasive display networks. In: Conference on Human Factors in Computing Systems (CHI'14), pp. 2357-2366, 2014.
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Evaluation of Visualizations for Interface Analysis of SPH
Krone, Michael; Huber, Markus; Scharnowski, Katrin; Hirschler, Manuel; Kauker, Daniel; Reina, Guido; Nieken, Ulrich; Weiskopf, Daniel; Ertl, Thomas: Evaluation of Visualizations for Interface Analysis of SPH. In: EuroVis 2014 Short Papers, pp. 109-113, 2014.
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Visual Analysis of Dynamic Protein Cavities and Binding Sites
Krone, Michael; Kauker, Daniel; Reina, Guido; Ertl, Thomas: Visual Analysis of Dynamic Protein Cavities and Binding Sites. In: IEEE PacificVis - Visualization Notes, pp. 301-305, 2014.
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Visualization of Molecular Structures using State-of-the-Art Techniques in WebGL
Mwalongo, Finian; Krone, Michael; Karch, Grzegorz K.; Becher, Michael; Reina, Guido; Ertl, Thomas: Visualization of Molecular Structures using State-of-the-Art Techniques in WebGL. In: International Conference on 3D Web Technology (Web3D'14), pp. 133-141, 2014.
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Tools and methods for creating interactive artifacts
Kubitza, Thomas; Schmidt, Albrecht; Pohl, Norman; Petrelli, Daniela; Dingler, Tilman; Dulake, Nick: Tools and methods for creating interactive artifacts. In: Eighth International Conference on Tangible, Embedded, and Embodied Interaction (TEI'14), pp. 385-388, 2014.
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2013

Kauker, Daniel; Krone, Michael; Panagiotidis, Alexandros; Reina, Guido; Ertl, Thomas: Evaluation of per-pixel linked lists for distributed rendering and comparative analysis. In: Computing and Visualization in Science : Vol. 15, No. 3 (2013), pp. 111-121.
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Interactive Extraction and Tracking of Biomolecular Surfaces Features
Krone, Michael; Reina, Guido; Schulz, Christoph; Kulschewski, Tobias; Pleiss, Jürgen; Ertl, Thomas: Interactive Extraction and Tracking of Biomolecular Surfaces Features. In: Computer Graphics Forum: Vol. 32, No. 3 (2013), p. 331–340.
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Spearcons (speech-based earcons) improve navigation performance in advanced auditory menus
Walker, Bruce; Lindsay, Jeffrey; Nance, Amanda; Nakano, Yoko; Palladino, Dianne; Dingler, Tilman; Jeon, Myhounghoon: Spearcons (speech-based earcons) improve navigation performance in advanced auditory menus. In: Human Factors: The Journal of the Human Factors and Ergonomics Society (2013).
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Gralka, Patrick; Grottel, Sebastian; Reina, Guido; Ertl, Thomas: Application-Specific Compression of Large MD Data Preserving Physical Characteristics. In: Proceedings of IEEE Symposium on Large-Scale Data Analysis and Visualization, pp. 85-93, 2013.
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Rendering Molecular Surfaces using Order-Independent Transparency
Kauker, Daniel; Krone, Michael; Panagiotidis, Alexandros; Reina, Guido; Ertl, Thomas: Rendering Molecular Surfaces using Order-Independent Transparency. In: Eurographics Symposium on Parallel Graphics and Visualization (EGPGV), pp. 33-40, 2013.
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Automatic Classification of Mobile Phone Contacts
Sahami, Alireza; Le, Huy Viet; Henze, Niels; Schmidt, Albrecht: Automatic Classification of Mobile Phone Contacts. In: Mensch & Computer 2013: Interaktive Vielfalt, pp. 27-36, 2013.
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Thermal imaging for interactive surfaces
Abdelrahman, Yomna: Thermal imaging for interactive surfaces. HCI, 2013.
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2012

GPU-Accelerated Visualization
Ament, Marco; Frey, Steffen; Müller, Christoph; Grottel, Sebastian; Ertl, Thomas; Weiskopf, Daniel: GPU-Accelerated Visualization. In: E. W. Bethel, H. Childs, and C. Hansen: High Performance Visualization: Enabling Extreme-Scale Scientific Insight. Chapman and Hall/CRC, 2012.
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Frey, Steffen; Reina, Guido; Ertl, Thomas: SIMT Microscheduling: Reducing Thread Stalling in Divergent Iterative Algorithms. In: 20th Euromicro International Conference on Parallel, Distributed and Network-Based Processing (PDP), 2012, pp. 399-406, 2012.
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Object-Space Ambient Occlusion for Molecular Dynamics
Grottel, Sebastian; Krone, Michael; Scharnowski, Katrin; Ertl, Thomas: Object-Space Ambient Occlusion for Molecular Dynamics. In: Proceedings of IEEE Pacific Visualization Symposium 2012, pp. 209-216, 2012.
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Untersuchung von Eindeutigen Büchi Automaten
Pflüger, Hermann: Untersuchung von Eindeutigen Büchi Automaten. Universität Stuttgart, 2012.
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Point-based Visualization of Molecular Dynamics Data Sets
Grottel, Sebastian: Point-based Visualization of Molecular Dynamics Data Sets. Diss., Visualisierungsinstitut der Universität Stuttgart, 2012.
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2011

Loose Capacity-Constrained Representatives for the Qualitative Visual Analysis in Molecular Dynamics
Frey, Steffen; Schlömer, Thomas ; Grottel, Sebastian; Dachsbacher, Carsten; Deussen, Oliver; Ertl, Thomas: Loose Capacity-Constrained Representatives for the Qualitative Visual Analysis in Molecular Dynamics. In: Proceedings of the 2011 IEEE Pacific Visualization Symposium, pp. 51-58, 2011.
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Parallel Contour-Buildup Algorithm for the Molecular Surface
Krone, Michael; Grottel, Sebastian; Ertl, Thomas: Parallel Contour-Buildup Algorithm for the Molecular Surface. In: Proceedings of IEEE Symposium on Biological Data Visualization (biovis'11), pp. 17-22, 2011.
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Interactive Exploration of Polymer-Solvent Interactions
Thomaß, Bertram; Walter, Jonathan; Krone, Michael; Hasse, Hans; Ertl, Thomas: Interactive Exploration of Polymer-Solvent Interactions. In: International Workshop on Vision, Modeling and Visualization, pp. 301-308, 2011.
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2010

AudioFeeds: a mobile auditory application for monitoring online activities
Dingler, Tilman; Brewster, Stephen: AudioFeeds: a mobile auditory application for monitoring online activities. In: Proceedings of the international conference on Multimedia (2010).
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Interactive Image-Space Volume Visualization for Dynamic Particle Simulations
Falk, Martin; Grottel, Sebastian; Ertl, Thomas: Interactive Image-Space Volume Visualization for Dynamic Particle Simulations. In: Proceedings of The Annual SIGRAD Conference, pp. 35-43, 2010.
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Coherent Culling and Shading for Large Molecular Dynamics Visualization
Grottel, Sebastian; Reina, Guido; Dachsbacher, Carsten; Ertl, Thomas: Coherent Culling and Shading for Large Molecular Dynamics Visualization. In: Computer Graphics Forum (Proceedings of EUROVIS 2010), pp. 953-962, 2010.
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Particle-based Rendering for Porous Media.
Grottel, Sebastian; Reina, Guido; Zauner, Thomas; Hilfer, Rudolf; Ertl, Thomas: Particle-based Rendering for Porous Media.. In: Proceedings of The Annual SIGRAD Conference, pp. 45-51, 2010.
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2009

Topological Extraction and Tracking of Defects in Crystal Structures
Grottel, Sebastian; Dietrich, Carlos A.; Comba, João L. D.; Ertl, Thomas: Topological Extraction and Tracking of Defects in Crystal Structures. In: , pp. 167-178, 2009.
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Optimized Data Transfer for Time-dependent, GPU-based Glyphs.
Grottel, Sebastian; Reina, Guido; Ertl, Thomas: Optimized Data Transfer for Time-dependent, GPU-based Glyphs.. In: Proceedings of IEEE Pacific Visualization Symposium 2009, pp. 65-72, 2009.
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2008

Learnability of sound cues for environmental features: Auditory icons, earcons, spearcons, and speech
Dingler, Tilman; Lindsay, Jeffrey; Walker, Bruce: Learnability of sound cues for environmental features: Auditory icons, earcons, spearcons, and speech. In: Proceedings of the 14th International Conference on Auditory Display, Paris, France (2008).
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Horsch, Martin; Vrabec, Jadran; Bernreuther, Martin; Grottel, Sebastian; Reina, Guido; Wix, Andrea; Schaber, Karlheinz; Hasse, Hans: Homogeneous nucleation in supersaturated vapors of methane, ethane, and carbon dioxide predicted by brute force molecular dynamics. In: Journal of Chemical Physics: Vol. 128, No. 16 (2008), p. 164510.
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Visualization of Uncorrelated Point Data
Reina, Guido: Visualization of Uncorrelated Point Data. Diss., Visualisierungsinstitut der Universität Stuttgart, 2008.
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2007

Visual Verification and Analysis of Cluster Detection for Molecular Dynamics
Grottel, Sebastian; Reina, Guido; Vrabec, Jadran; Ertl, Thomas: Visual Verification and Analysis of Cluster Detection for Molecular Dynamics. In: Proceedings of IEEE Visualization '07, pp. 1624-1631, 2007.
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Image-Space GPU Metaballs for Time-Dependent Particle Data Sets
Müller, Christoph; Grottel, Sebastian; Ertl, Thomas: Image-Space GPU Metaballs for Time-Dependent Particle Data Sets. In: Proceedings of VMV '07, pp. 31-40, 2007.
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0

: . In: . 0.
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