University of Stuttgart
		Visualization Research Center VISUS
		Nobelstraße 15
		70569 Stuttgart
		Germany
		directions
		Tel: +49 (0)711 7816-454
		Fax: +49 (0)711 7816-213
		E-mail: Katrin.Bidmon@vis.uni-stuttgart.de

Research

Collaborative research centre (SFB) 716 : Dynamic simulation of systems with large numbers of particles

Subproject D.4 "Interactive Visualisation of Protein-Solvent Systems' Dynamic and Complex Properties"

In this subproject visualisation techniques for the interactive anlysis of protein-solvent systems are explored and developed. The main focus lies on the expolration of the dynamic properties of the solvent, which is treated unsatisfactorily or even failed to consider by present tools.

BMBF-Projekt AutoOpt (german only)

FEMod

Publications

Teaching

	WiSe 07/08	Hauptseminar Geometrie für Visualisierung und Computergraphik
	SoSe 2007	Hauptseminar Visualisierung zeitabhängiger Daten
	WiSe 06/07	Hauptseminar Algorithmen für Videoströme in der Computergraphik
	WiSe 05/06	Seminar Virtual und Augmented Reality Studienprojekt Suchmaschine für 3D-Objekte
	SoSe 2005	Hauptseminar Mathematische Methoden der Visualisierung Studienprojekt Suchmaschine für 3D-Objekte
	WiSe 04/05	Hauptseminar Hierarchische Visualisierungsverfahren Übungen zur Vorlesung Grundlagen der interaktiven Systeme
	SoSe 2004	Übungen zur Vorlesung Geometrische Algorithmen und ihre Visualisierung Hauptseminar Hierarchische Visualisierungsverfahren
	WiSe 03/04	Übungen zur Vorlesung Graphical-Interactive Systems
	SoSe 2003	Übungen zur Vorlesung Visualization
	WiSe 02/03	Übungen zur Vorlesung Grundlagen der interaktiven Systeme Übungen zur Vorlesung Modellierung und Animation

Advised student thesis

	Studienarbeit: Michael Ott, 2008 Representations of Solvent in Protein-Solvent-Systems Diplomarbeit: Bernd Dengel, 2008 Interactive visualisation of interfaces in molecular dynamics simulations Diplomarbeit: Michael Krone, 2008 Generation of Interactive Protein Surface Representation Studienarbeit: Michael Krone, 2007 Generation of Protein Representations Based on Secondary Structure Diplomarbeit: Andreas Schilling, 2007 Interactive Detection and Filling of arbitrary holes in FE meshes Diplomarbeit: Florian Schlachter, 2007 Generation of Interactive Protein Surfaces and Representations Diplomarbeit: Tin Duc Nguyen, 2006/2007 Ein Workflow zur verzerrungsfreien Texturierung von Fahrzeuggeometrien Diplomarbeit: Michael Grosse, 2006 Konvertierung einer Subdivisionsfläche in eine CAD-Topologie Studienarbeit: Alexander Kramer, 2005 Neuvernetzung mit Hilfe von Volumen

Publications

	2008
			A. Schilling, K. Bidmon, O. Sommer und T. Ertl. Filling Arbitrary Holes in Finite Element Models In Proceedings of 17th International Meshing Roundtable 2008, pages 231 - 248. [bibtex]
			K. Bidmon, S. Grottel, F. Bös, J. Pleiss, and T. Ertl. Visual Abstractions of Solvent Pathlines near Protein Cavities. In Computer Graphics Forum, Volume 27, Issue 3 (EuroVis 2008 Proceedings), pages 935 - 942, 2008. [bibtex]
			M. Krone, K. Bidmon and T. Ertl. GPU-based Visualisation of Protein Secondary Structure In Proceedings of TPCG 2008, pages 115 - 122. [bibtex]
	2007
			K. Bidmon, G. Reina, F. Bös, J. Pleiss, and T. Ertl. Time-Based Haptic Analysis of Protein Dynamics. In Proceedings of World Haptics Conference (WHC 2007), pp. 537-542 [pdf]   |   [bibtex]
	2006
			G. Reina, K. Bidmon, F. Enders, P. Hastreiter, and T. Ertl. GPU-Based Hyperstreamlines for Diffusion Tensor Imaging. In Proceedings of EUROVIS 2006, pages 35-42, 2006. [pdf]   |   [bibtex]
	2005
			Katrin Bidmon and Thomas Ertl. Generation of Mesh Variants via Volumetrical Representation and Subsequent Mesh Optimisation . In Proceedings 14th International Meshing Roundtable, pages 275-286, 2005. [pdf]   |   [bibtex]
	2004
			K. Bidmon, D. Rose, and T. Ertl. Intuitive, Interactive, and Robust Modification and Optimization of Finite Element Models. In Proceedings 13 International Meshing Roundtable, pages 59-69, 2004. [pdf]   |   [bibtex]
			D. Rose, K. Bidmon, and T. Ertl. Intuitive and Interactive Modification of Large Finite Element Models. In Proceedings of IEEE Visualization '04 , pages 361-368. IEEE, 2004. [pdf]   |   [bibtex]