SFB 716 | Dynamische Simulation von Systemen mit großen Teilchenzahlen

Mit Computersimulationen lassen sich vielfältige Fragen zu hochkomplexen Vorgängen aus Natur und Technik schnell und kostengünstig beantwortet werden. Teilweise werden Untersuchungen auf diese Weise überhaupt erst möglich. Um realistisch, ausreichend lange und umfangreich zu simulieren, sind enorme Datenmengen zu verarbeiten. Das stellt eine große Herausforderung für die Forschung in verschiedensten Fachbereichen dar.

Das Team des Sonderforschungsbereiches (SFB) 716 der Universität Stuttgart entwickelt Werkzeuge für Teilchensimulationen, bei denen jedes Teilchen eines Systems exakt abgebildet wird. Ihre Vision ist es, den stetig steigenden Anforderungen gerecht zu werden und das Potential dieser Methodik künftig in der industriellen Forschung und Ent­wicklung nutzbar zu machen.

Teilprojekte

VIS und VISUS trägt im SFB 716 vor allem durch die Visualisierung der komplexen Simulationsdaten bei. Darüber hinaus trägt sie die Öffentlichkeitsarbeit für dieses Forschungsthema. Die Institute sind mit folgenden Teilprojekten eingebunden:



Publikationen

  1. Reina, Guido ; Gralka, Patrick ; Ertl, Thomas: A decade of particle-based scientific visualization. In: Holm, C. ; Ertl, T. ; Schmauder, S. ; Kästner, J. ; Groß, J. (Hrsg.) The European Physical Journal (Special Topics), The European Physical Journal (Special Topics). Bd. 227: Particle Methods in Natural Science and Engineering (2019), Nr. 14, S. 1705--1723
  2. Gralka, Patrick ; Becher, Michael ; Braun, Matthias ; Frieß, Florian ; Müller, Christoph ; Rau, Tobias ; Schatz, Karsten ; Schulz, Christoph ; u. a.: MegaMol -- a comprehensive prototyping framework for visualizations. In: The European Physical Journal (Special Topics), The European Physical Journal (Special Topics). Bd. 227: Particle Methods in Natural Science and Engineering (2019), Nr. 14, S. 1817--1829
  3. Schatz, Karsten ; Krone, Michael ; Pleiss, Jürgen ; Ertl, Thomas: Interactive visualization of biomolecules’ dynamic and complex properties. In: Holm, C. ; Ertl, T. ; Schmauder, S. ; Kästner, J. ; Groß, J. (Hrsg.) The European Physical Journal (Special Topics), The European Physical Journal (Special Topics). Bd. 227: Particle Methods in Natural Science and Engineering (2019), Nr. 14, S. 1725--1739
  4. Miao, Haichao ; Klein, Tobias ; Kouřil, David ; Mindek, Peter ; Schatz, Karsten ; Gröller, M. Eduard ; Kozlíková, Barbora ; Isenberg, Tobias ; u. a.: Multiscale Molecular Visualization. In: Wright, P. (Hrsg.) Journal of Molecular Biology, Journal of Molecular Biology. Bd. 431 (2019), Nr. 6, S. 1049–1070
  5. Miao, Haichao ; Klein, Tobias ; Kouřil, David ; Mindek, Peter ; Schatz, Karsten ; Gröller, M. Eduard ; Kozlíková, Barbora ; Isenberg, Tobias ; u. a.: Multiscale Molecular Visualization. In: Journal of Molecular Biology, Journal of Molecular Biology. (2018)
  6. Ibrahim, Mohamed ; Wickenhäuser, Patrick ; Rautek, Peter ; Reina, Guido ; Hadwiger, Markus: Screen-Space Normal Distribution Function Caching for Consistent Multi-Resolution Rendering of Large Particle Data. In: IEEE Transactions on Visualization and Computer Graphics, IEEE Transactions on Visualization and Computer Graphics. Bd. 24 (2018), Nr. 1, S. 944–953
  7. Müller, Christoph ; Krone, Michael ; Huber, Markus ; Biener, Verena ; Herr, Dominik ; Koch, Steffen ; Reina, Guido ; Weiskopf, Daniel ; u. a.: Interactive Molecular Graphics for Augmented Reality Using HoloLens. In: Schreiber, F. ; Hofestädt, R. (Hrsg.) Journal of Integrative Bioinformatics, Journal of Integrative Bioinformatics. Bd. 15 (2018), Nr. 2
  8. Schulz, Christoph ; Schatz, Karsten ; Krone, Michael ; Braun, Matthias ; Ertl, Thomas ; Weiskopf, Daniel: Uncertainty Visualization for Secondary Structures of Proteins. In: IEEE Pacific Visualization Symposium, IEEE Pacific Visualization Symposium, 2018, S. 96–105
  9. Rau, Tobias ; Krone, Michael ; Reina, Guido ; Ertl, Thomas: Challenges and Opportunities using Software-defined Visualization in MegaMol. In: 7th Workshop on Visual Analytics, Information Visualization and Scientific Visualization, 7th Workshop on Visual Analytics, Information Visualization and Scientific Visualization, 2017
  10. Krone, Michael ; Frieß, Florian ; Scharnowski, Katrin ; Reina, Guido ; Fademrecht, Silvia ; Kulschewski, Tobias ; Pleiss, Jürgen ; Ertl, Thomas: Molecular Surface Maps. In: IEEE Transactions on Visualization and Computer Graphics (Proceedings of the Scientific Visualization 2016), IEEE Transactions on Visualization and Computer Graphics (Proceedings of the Scientific Visualization 2016). Bd. 23 (2017a), Nr. 1
  11. Zhou, Liang ; Weiskopf, Daniel: Indexed-Points Parallel Coordinates Visualization of Multivariate Correlations. In: IEEE Transactions on Visualization and Computer Graphics, IEEE Transactions on Visualization and Computer Graphics. Bd. 24 (2017), Nr. 6, S. 1997–2010
  12. Alharbi, Naif ; Alharbi, Mohammad ; Martinez, Xavier ; Krone, Michael ; Rose, Alexander ; Baaden, Marc ; Laramee, Robert S. ; Chavent, Matthieu: Molecular Visualization of Computational Biology Data: A Survey of Surveys. In: EuroVis 2017 Short Papers, EuroVis 2017 Short Papers, 2017
  13. Reinhardt, Stefan ; Huber, Markus ; Dumitrescu, Otilia ; Krone, Michael ; Eberhardt, Bernhard ; Weiskopf, Daniel: Visual Debugging of SPH Simulations. In: International Conference on Information Visualisation (IV), International Conference on Information Visualisation (IV). Bd. 21, 2017, S. 117–126
  14. Schatz, Karsten ; Krone, Michael ; Müller, Christoph ; Schneider, Jens ; Reina, Guido ; Ertl, Thomas: Visualization of Halo Topologies in Dark Matter Simulations. In: Proceedings of TopoInVis, Proceedings of TopoInVis, 2017. — Rezensiertes Abstract
  15. Krone, Michael ; Reina, Guido ; Zahn, Sebastian ; Tremel, Tina ; Bahnmüller, Carsten ; Ertl, Thomas: Implicit Sphere Shadow Maps. In: IEEE PacificVis - Visualization Notes, IEEE PacificVis - Visualization Notes. Bd. 4, 2017b
  16. Gralka, Patrick ; Grottel, Sebastian ; Staib, Joachim ; Schatz, Karsten ; Karch, Grzegorz Karol ; Hirschler, M. ; Krone, Michael ; Reina, Guido ; u. a.: 2016 IEEE Scientific Visualization Contest Winner: Visual and Structural Analysis of Point-based Simulation Ensembles. In: IEEE Computer Graphics & Applications, IEEE Computer Graphics & Applications. (2017a)
  17. Gralka, Patrick ; Schulz, Christoph ; Reina, Guido ; Weiskopf, Daniel ; Ertl, Thomas: Visual Exploration of Memory Traces and Call Stacks. In: 2017 IEEE Working Conference on Software Visualization (VISSOFT), 2017 IEEE Working Conference on Software Visualization (VISSOFT) : IEEE, 2017b, S. 54–63
  18. Hermosilla, Pedro ; Krone, Michael ; Guallar, Victor ; Vázquez, Pere-Pau ; Vinacua, Àlvar ; Ropinski, Timo: Interactive GPU-based Generation of Solvent Excluded Surfaces. In: The Visual Computer (Proceedings of CGI’2017), The Visual Computer (Proceedings of CGI’2017). Bd. 33, Springer (2017), Nr. 6, S. 869–881
  19. Krone, Michael ; Schatz, Karsten ; Hieronymus, Nora ; Müller, Christoph ; Becher, Michael ; Barthelmes, Tina ; Cooper, April ; Currle, Steffen ; u. a.: From Visualization Research to Public Presentation - Design and Realization of a Scientific Exhibition. In: Proceedings of SIGRAD 2017, Proceedings of SIGRAD 2017, 2017c
  20. Müller, Christoph ; Krone, Michael ; Scharnowski, Katrin ; Reina, Guido ; Ertl, Thomas: An Evaluation of the Utility of Large High-Resolution Displays for Comparative Scientific Visualisation. In: International Journal of Software and Informatics (IJSI), International Journal of Software and Informatics (IJSI). Bd. 9 (2016), Nr. 3, S. 355–370
  21. Krone, Michael ; Kozlíková, Barbora ; Lindow, Norbert ; Baaden, Marc ; Baum, Daniel ; Parulek, Julius ; Hege, Hans-Christian ; Viola, Ivan: Visual Analysis of Biomolecular Cavities: State of the Art. In: Computer Graphics Forum, Computer Graphics Forum. Bd. 35, Whiley (2016), Nr. 3
  22. Falk, Martin ; Grottel, Sebastian ; Krone, Michael ; Reina, Guido: Interactive GPU-based Visualization of Large Dynamic Particle Data. In: Synthesis Lectures on Visualization, Synthesis Lectures on Visualization. Bd. 4, Morgan & Claypool Publishers (2016), Nr. 3, S. 1--121
  23. Kauker, Daniel ; Falk, Martin ; Reina, Guido ; Ynnerman, Anders ; Ertl, Thomas: VoxLink - Combining sparse volumetric data and geometry for efficient rendering. In: Computational Visual Media, Computational Visual Media. Bd. 2 (2016), Nr. 1, S. 45–56
  24. Mwalongo, Finian ; Krone, Michael ; Reina, Guido ; Ertl, Thomas: State-of-the-Art Report in Web-based Visualization. In: Computer Graphics Forum, Computer Graphics Forum. Bd. 35, Whiley (2016b), Nr. 3
  25. Grottel, Sebastian ; Reina, Guido ; Krone, Michael ; Müller, Christoph ; Ertl, Thomas: MegaMol - for Fun and Profit. In: Workshop on Visualization in Practice, Workshop on Visualization in Practice, 2016
  26. Mwalongo, Finian ; Krone, Michael ; Becher, Michael ; Reina, Guido ; Ertl, Thomas: GPU-based Remote Visualization of Dynamic Molecular Data on the Web. In: Graphical Models, Graphical Models. Bd. 88, Elsevier (2016a)
  27. Kozlíková, Barbora ; Krone, Michael ; Falk, Martin ; Lindow, Norbert ; Baaden, Marc ; Baum, Daniel ; Viola, Ivan ; Parulek, Julius ; u. a.: Visualization of Molecular Structure: State of the Art Revisited. In: Computer Graphics Forum, Computer Graphics Forum. Bd. 36 (2016), Nr. 8, S. 178–204
  28. Schatz, Karsten ; Müller, Christoph ; Krone, Michael ; Schneider, Jens ; Reina, Guido ; Ertl, Thomas: Interactive Visual Exploration of a Trillion Particles. In: IEEE ; IEEE (Hrsg.) ; IEEE (Hrsg.): Symposium on Large Data Analysis and Visualization (LDAV), Symposium on Large Data Analysis and Visualization (LDAV), 2016
  29. Lawonn, Kai ; Krone, Michael ; Ertl, Thomas ; Preim, Bernhard: On the Reproducibility of Line Integral Convolution for Real-Time Illustration of Molecular Surface Shape and Salient Regions. In: EuroRV3: EuroVis Workshop on Reproducibility, Verification, and Validation in Visualization, EuroRV3: EuroVis Workshop on Reproducibility, Verification, and Validation in Visualization. Bd. 3, 2015. — Rezensiertes Abstract
  30. Grottel, Sebastian ; Krone, Michael ; Müller, Christoph ; Reina, Guido ; Ertl, Thomas: MegaMol – A Prototyping Framework for Particle-based Visualization. In: IEEE Transactions on Visualization and Computer Graphics, IEEE Transactions on Visualization and Computer Graphics. Bd. 21, IEEE (2015), Nr. 2
  31. Rau, Benjamin ; Frieß, Florian ; Krone, Michael ; Müller, Christoph ; Ertl, Thomas: Enhancing Visualization of Molecular Simulations using Sonification. In: International Workshop on Virtual and Augmented Reality for Molecular Science (VARMS@IEEEVR), International Workshop on Virtual and Augmented Reality for Molecular Science (VARMS@IEEEVR). Bd. 1 : IEEE, 2015
  32. Kauker, Daniel: Distributed computing and transparency rendering for large displays, Visualisierungsinstitut der Universität Stuttgart, PhD dissertation, 2015
  33. Mwalongo, Finian ; Krone, Michael ; Becher, Michael ; Reina, Guido ; Ertl, Thomas: Remote Visualization of Dynamic Molecular Data using WebGL. In: ACM ; ACM (Hrsg.) ; ACM (Hrsg.): International Conference on 3D Web Technology (Web3D), International Conference on 3D Web Technology (Web3D). Bd. 20, 2015
  34. Müller, Christoph ; Krone, Michael ; Scharnowski, Katrin ; Reina, Guido ; Ertl, Thomas: On the Utility of Large High-Resolution Displays for Comparative Scientific Visualisation. In: International Symposium on Visual Information Communication and Interaction (VINCI), International Symposium on Visual Information Communication and Interaction (VINCI). Bd. 15 : ACM, 2015, S. 131–136
  35. Panagiotidis, Alexandros ; Reina, Guido ; Burch, Michael ; Pfannkuch, Tilo ; Ertl, Thomas: Consistently GPU-Accelerated Graph Visualization. In: International Symposium on Visual Information Communication and Interaction, International Symposium on Visual Information Communication and Interaction. Bd. 15 : ACM, 2015, S. 35–41
  36. Scharnowski, Katrin ; Krone, Michael ; Reina, Guido ; Ertl, Thomas: On the Reproducibility of our Biomolecular Visualization. In: Aigner, W. ; Rosenthal, P. ; Scheidegger, C. ; Aigner, W. ; Rosenthal, P. ; Scheidegger, C. (Hrsg.) ; Aigner, W. ; Rosenthal, P. ; Scheidegger, C. (Hrsg.): EuroRV3: EuroVis Workshop on Reproducibility, Verification, and Validation in Visualization, EuroRV3: EuroVis Workshop on Reproducibility, Verification, and Validation in Visualization. Bd. 3 : The Eurographics Association, 2015. — Rezensiertes Abstract
  37. Krone, Michael ; Müller, Christoph ; Ertl, Thomas ; Kauker, Daniel ; Silva, Augusto Cravo ; Salsa, Diana ; Gräber, Manuel ; Kallert, Manuela: Remote Rendering and User Interaction on Mobile Devices for Scientific Visualization. In: International Symposium on Visual Information Communication and Interaction (VINCI), International Symposium on Visual Information Communication and Interaction (VINCI). Bd. 8 : ACM, 2015
  38. Krone, Michael: Interactive Visual Analysis of Biomolecular Simulations, Universität Stuttgart, PhD dissertation, 2015
  39. Grottel, Sebastian ; Heinrich, Julian ; Weiskopf, Daniel ; Gumhold, S.: Visual Analysis of Trajectories in Multi-Dimensional State Spaces. In: Computer Graphics Forum, Computer Graphics Forum. Bd. 33 (2014), Nr. 6
  40. Burch, Michael ; Blascheck, Tanja ; Louka, Christine ; Weiskopf, Daniel: Visualizing Hierarchy Changes by Dynamic Indented Plots. In: Proceedings of the International Joint Proceedings of the 5th International Conference on Information Visualization Theory and Applications, IVAPP ’14, Proceedings of the International Joint Proceedings of the 5th International Conference on Information Visualization Theory and Applications, IVAPP ’14, 2014
  41. Kurzhals, Kuno ; Höferlin, Markus ; Weiskopf, Daniel: Evaluation of Attention-Guiding Video Visualization. In: Computer Graphics Forum, Computer Graphics Forum. Bd. 32 (2013), Nr. 3
  42. Bachthaler, Sven: Interactive Visual Analysis of Vector Fields, Visualisierungsinstitut der Universität Stuttgart, PhD dissertation, 2013
  43. Heinrich, Julian ; Weiskopf, Daniel: Parallel-Coordinates Art. In: Proceedings of the IEEE VIS Arts Program (VISAP), Proceedings of the IEEE VIS Arts Program (VISAP), 2013a
  44. Heinrich, Julian ; Weiskopf, Daniel: State of the Art of Parallel Coordinates. In: Association, E. ; Association, E. (Hrsg.) ; Association, E. (Hrsg.): STAR Proceedings of Eurographics 2013, STAR Proceedings of Eurographics 2013, 2013b
  45. Kurzhals, Kuno ; Weiskopf, Daniel: Space-Time Visual Analytics of Eye-Tracking Data for Dynamic Stimuli. In: IEEE Transactions on Visualization and Computer Graphics (TVCG), IEEE Transactions on Visualization and Computer Graphics (TVCG). Bd. 12 (2013), Nr. 19
  46. Vehlow, Corinna ; Reinhardt, Thomas ; Weiskopf, Daniel: Visualizing Fuzzy Overlapping Communities in Networks. In: IEEE (Hrsg.) IEEE Transactions on Visualization and Computer Graphics, IEEE Transactions on Visualization and Computer Graphics. Bd. 19 (2013), Nr. 12
  47. Heinrich, Julian ; Luo, Yuan ; Kirkpatrick, Arthur E. ; Weiskopf, Daniel: Evaluation of a Bundling Technique for Parallel Coordinates. In: Proceedings of International Conference on Information Visualization Theory and Applications, Proceedings of International Conference on Information Visualization Theory and Applications. (2012)
  48. Grottel, Sebastian ; Reina, Guido ; Ertl, Thomas: Optimized Data Transfer for Time-dependent, GPU-based Glyphs. In: Proceedings of IEEE Pacific Visualization Symposium 2009, Proceedings of IEEE Pacific Visualization Symposium 2009, 2009